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Animal Ethics Biosafety Human Research Ethics Research Integrity

Study of reproducibility issues points finger at the mice – ARS Technica (John Timmer | May 2022)

Posted by Dr Gary Allen in on June 13, 2022

The Linked Original Item was Posted On May 12, 2022

Scientist with rat and mascara brush in chemical laboratory, closeup. Animal testing

Experiments may have a certain amount of randomness that can’t be eliminated.

Over the last decade or so, the science community has been concerned about what has been called the “reproducibility crisis”: the apparent failure of some significant experiments to produce the same results when they’re repeated. That failure has led to many suggestions about what might be done to improve matters, but we still don’t fully understand why experiments are failing to reproduce results.

One area of the reproducibility crisis is our failure to reproduce the work of  honest and conscientious animal researchers.  We have struggled to understand the cause of the problem and what we can do to fix it.  Unfairly, it might cause questions to be raised about the work of the scientists concerned.  These problems are of particular concern when the work relates to the development and testing of new treatments and other medical work.  This interesting item raises an issue that might change our thinking.  The problem isn’t in the project design, or the conduct of the researchers, it is due to the variability of mice and how they respond to testing agents.

A few recent studies have attempted to pinpoint the underlying problem. A new study approached reproducibility failure by running a set of identical behavioral experiments in several labs in Switzerland and Germany. It found that many of the differences come down to the lab itself. But there’s also variability in the results that can’t be ascribed to any obvious cause and may just arise from differences between individual mice.

Try and try again

The basic outline of the work is pretty simple: Get three labs to perform the same set of 10 standard behavioral experiments on mice. But the researchers took a number of additional steps to allow a detailed look at the underlying factors that might drive variation in experimental results. The experiments were done on two different mouse strains, both of which had been inbred for many generations, limiting genetic variability. All the mice were ordered from the same company. They were housed in identical conditions and were tested while they were the same age.

Each of the three labs did two repetitions of the experiment. In one, all the work was done by a single individual to cut down on the influence of differences in how the mice were handled. In the second, three different people did the experiments to add some variability.

Study of reproducibility issues points finger at the mice
Experiments may have a certain amount of randomness that can’t be eliminated.

Related Reading

A Decade of Open Data in Research — Real Change or Slow Moving Compliance? – Scholarly Kitchen (Mark Hahnel | March 2022)

Best practice methodology in the use of animals for scientific purposes 2017 (Updated July 2018), (NHMRC, et al | July 2018)

Want research integrity? Stop the blame game – Nature (Malcolm Macleod | November 2021)

‘Give up freedoms’ to solve reproducibility crisis, says expert – Times Higher Education (Jack Grove | August 2021)

(UK) Research integrity: a landscape study – vitae

Good research begins long before papers get written – Nature (Editorial | April 2021)

(US) Harvard Data Science Review explores reproducibility and replicability in science – EurekAlert (Amy Harris | December 2020)

A controlled trial for reproducibility – Nature (Marc P. Raphael, et al | March 2020)

Guest Post: Interesting Versus True? Measuring Transparency and Reproducibility of Biomedical Articles – Scholarly Kitchen (Anita Bandrowski and Martijn Roelandse | December 2019)

We’re Incentivizing Bad Science – Scientific American (James Zimring | October 2019)

Knowledge and attitudes among life scientists towards reproducibility within journal articles (Papers: Evanthia Kaimaklioti Samota and Robert P. Davey | June 2019)

Rein in the four horsemen of irreproducibility – Nature ( Dorothy Bishop | April 2019)

To move research from quantity to quality, go beyond good intentions – Nature ( Alan Finkel | February 2019)

Reboot undergraduate courses for reproducibility – Nature (Katherine Button | September 2018)

A survey on data reproducibility and the effect of publication process on the ethical reporting of laboratory research (Papers: Delphine R Boulbes, et al | 2018)

Opinion: Is science really facing a reproducibility crisis, and do we need it to? (Papers: Daniele Fanelli | 2018)

Clinical trials revolution could change the future of medical research – The Guardian (Chris Chambers | August 2017)

Scientific Integrity: Dropping Points – EUROSCIENTIST (Michel Morange | May 2017)

What does research reproducibility mean? (Papers: Steven N. Goodman, et al | 2016)

“Failure is an essential part of science:” A Q&A with the author of a new book on reproducibility – Retraction Watch (Ivan Oransky | April 2017)

One reason so many scientific studies may be wrong – The Conversation (Geoff Cumming October 2016)

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